Glyma15g23400 - SoyBase

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Report for Sequence Feature Glyma15g23400

Feature Type:	gene_model
Chromosome:	Gm15
Start:	22625842
stop:	22632032
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g23400

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G18130	AT	Annotation by Michelle Graham. TAIR10: phytochrome E \| chr4:10042312-10045948 REVERSE LENGTH=1112	SoyBase	E_val: 0	ISS
GO:0006346	GO-bp	Annotation by Michelle Graham. GO Biological Process: methylation-dependent chromatin silencing	SoyBase	N/A	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0007165	GO-bp	Annotation by Michelle Graham. GO Biological Process: signal transduction	SoyBase	N/A	ISS
GO:0009584	GO-bp	Annotation by Michelle Graham. GO Biological Process: detection of visible light	SoyBase	N/A	ISS
GO:0009585	GO-bp	Annotation by Michelle Graham. GO Biological Process: red, far-red light phototransduction	SoyBase	N/A	ISS
GO:0010155	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of proton transport	SoyBase	N/A	ISS
GO:0016246	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA interference	SoyBase	N/A	ISS
GO:0017006	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein-tetrapyrrole linkage	SoyBase	N/A	ISS
GO:0018106	GO-bp	Annotation by Michelle Graham. GO Biological Process: peptidyl-histidine phosphorylation	SoyBase	N/A	ISS
GO:0018298	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein-chromophore linkage	SoyBase	N/A	ISS
GO:0046777	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein autophosphorylation	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0000155	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphorelay sensor kinase activity	SoyBase	N/A	ISS
GO:0004673	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein histidine kinase activity	SoyBase	N/A	ISS
GO:0004871	GO-mf	Annotation by Michelle Graham. GO Molecular Function: signal transducer activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0008020	GO-mf	Annotation by Michelle Graham. GO Molecular Function: G-protein coupled photoreceptor activity	SoyBase	N/A	ISS
GO:0009881	GO-mf	Annotation by Michelle Graham. GO Molecular Function: photoreceptor activity	SoyBase	N/A	ISS
GO:0042803	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein homodimerization activity	SoyBase	N/A	ISS
PTHR24423	Panther	TWO COMPONENT SIGNAL TRANSDUCTION PROTEIN-RELATED	JGI		ISS
PF00360	PFAM	Phytochrome region	JGI		ISS
PF00512	PFAM	His Kinase A (phosphoacceptor) domain	JGI		ISS
PF00989	PFAM	PAS fold	JGI		ISS
PF01590	PFAM	GAF domain	JGI		ISS
PF02518	PFAM	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	JGI		ISS
UniRef100_Q2HRN2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Phytochrome n=1 Tax=Medicago truncatula RepID=Q2HRN2_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233B184	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233B184 related cluster n=1 Tax=unknown RepID=UPI000233B184	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma15g23400

Locus	Gene Symbol	Protein Name
	PHYE2	Phytochrome E gene 2

Expression Patterns of Glyma15g23400

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g23400

Paralog	Evidence	Comments
Glyma09g11600	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g23400 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g196500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g23400

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g23400

Limit To All Plant Sequences

>Glyma15g23400.2   sequence type=CDS   gene model=Glyma15g23400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATCTGTGATTGCCATGCAAAGCCGGTTAAGGTTATTCAGAGTGAAGAACTAAGGCAACCTCTTTGCTTGGTGAACTCAACCCTTAGGTTACCACATGGTTGTCACACTCAGTACATGGCCAACATGGGCTCAATTGCCTCTCTGGTGATGGCAATTATAGTCAATGGAAAGGATGCAACAAGGCTTTGGGGTTTGCTAGTTTGTCATCACACTTCACCACGCTCTGTGTCTTTCCTGGTTCGCTATGCTTGTGAGTTCCTAATGCAGACTTTTGGACTGCAGCTTTACATGGAGATTCAATTGGCATCACAGATGGCAGAGAAGAGAATTCTTAAGACACAAACCTTACTGTGTGACATGCTCCTTCGTGATGCACCATTCGGCATTGTTAATCAATCCCCAAGTATCATGGATCTTGTGAAGTGTGACGGGGCTGCCTTGTATTATGAAGGAAACTGTTGGCTGTTAGGCACAACCCCAACTGAAGCACAGGTGAAAGACATAGCTGAATGGCTACTTAGTAATCATGGGGACTCAACAGGTTTGACAACAGATAGTTTGGCCGATGCTGGTTATCCAGGCGCTGCTTCACTGGGCGATGCAGTTTGTGGCATGGCCACAGCAAGAATCAATTCAAAACATTTCTTGTTCTGGTTCAGATCTCACACTGCTAAGGAAGTGAAATGGGGAGGAGCCAAGCACCATCCAGAGGATAAAGATGATGGAGGAAAAATGAACCCAAGATCATCATTTAAAGCTTTTCTTGAAGTAGTCAAAAGCAAAAGTTTGCCTTGGGAAGTGCTGGAAATCAATGCTATTCACTCATTGCAACTAATAATAAGAGATTCATTCCAAGACACAGAGAACACTGGTCCAAAGACTTTAAGTTATGTACAGAAAAGTGACACTGCAGCTGGAGGGATGGATGAACTCAGTTCAGTAGCACTTCAAATGGTGAGATTAATTGAGACAGCAACAGTCCCAATTTTTGGGGTTGATTTAGGCGGTGTAATCAATGGATGGAATACTAAAATAGCGGAATTGACAGGTCTACAGGCCAGTGAAGCTATGGGAAAATCCCTGGTAAATGAAATTATACATGCGGACTCGGGTGACACTTTTAAAAATACTCTAAGCAGAGCCTTGCAAGGCCAGGAGGACAAAAATGTTGAGTTGAAAATAAAACACTTTGGGCTTGATCAACAACAGGAAGTTGCATGTCTCATGGTCAATGCTTGCATTAGTAGGGACTACACAGATGCTATTGTTGGGGTATGCTTTGTAGGTGAAGACATCACTTATGAAAAAGTGGTTCAAGATAAATTCATCAAGTTGGAAGGTGATTACAAAGCAATCATACAGAGTCTGAGTCCACTGATTCCACCCATATTTTCTTCTGATGAGAATGTCTGCTGCTCTGAATGGAATGCAGCGATGGAGAGGCTAACTGGTTGGAAAAGAGATGAAGTCATAGGAAAATTGCTTCCTGGTGAAATTTTTGGAAGCTTTTGTCGACTAAAAGGTCAAGATACACTGACTAATTTTATGATTTTACTATACCGTGGAATAAGCCGTCAAGATTCTGAGAAGTTACCATTTGGATTTTTTCATAGAAATGGAGAATTCATAGAGACTTACATAACAGCAAACAAGAAAATTGATGCTGGTGGGAATATGCTTGGCTGTTTCTGCTTCTTGCAGATTGTAATGCCAGACCTGAATCAGCCTTCTGAAGAACACAATCCTAGAGGCAGGGAAAGCATTTCTGAATCTGAAGAGGCATATATACTACAAGAGATGAAGAAACCTTTAAATGGTATACGATTCACCCGCAAACTTTTGGAAAATACAACTGTCTCGGAAAACCAAAAACAATTTCTTGACACTAGTGATGCATGTGAAAGACAAATCATGGCAATTATTGAGGATACACACTTGGGAAGTATTAACGAAGACACTTTGCAGCTAAACGTGGAAGAGTTTGTTCTGGGAAATATTTTAGATGCCATTGTCAGTCAAGTCATGATGTTGATAAGAGAGAAGAACTTGCAACTGTTTCACGAAATTCCTGATGAAATAAAAATGCTTTCTCTATATGGTGACCAAATTAGGCTTCAGGTGGTCTTGTCTGACTTTTTGCTTAATGTAGTCAGCCATACGGCATCTCCAAATGGCTGGGTAGAAATCAAGGTTTCACCTACTTTAAAGATAATACAGGATGGTGATGAGTTTATCCATCTGCAGTTCAGAATTGCCCATTCTGGTCAAGGTATTCCTTCCAATGTTATTCATGAAATGGTTGAAGGAGGGAATCAATGGACTACACAGGAAGGTCTAGGACTATATATGTCCAGGAAAATTCTCAGGAGGATGAGTGGTCATGTCCGCTACCAAAGAGGACAAGATATGTGCTATTTTCTCATTGATCTTGAAATTAGAACAAGAAAAGAAAGGCAAAGGAATTTGCATGCAAAGACAAGCATGTTAAGTTAG

Predicted protein sequences of Glyma15g23400

Limit To All Plant Sequences

>Glyma15g23400.2   sequence type=predicted peptide   gene model=Glyma15g23400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MICDCHAKPVKVIQSEELRQPLCLVNSTLRLPHGCHTQYMANMGSIASLVMAIIVNGKDATRLWGLLVCHHTSPRSVSFLVRYACEFLMQTFGLQLYMEIQLASQMAEKRILKTQTLLCDMLLRDAPFGIVNQSPSIMDLVKCDGAALYYEGNCWLLGTTPTEAQVKDIAEWLLSNHGDSTGLTTDSLADAGYPGAASLGDAVCGMATARINSKHFLFWFRSHTAKEVKWGGAKHHPEDKDDGGKMNPRSSFKAFLEVVKSKSLPWEVLEINAIHSLQLIIRDSFQDTENTGPKTLSYVQKSDTAAGGMDELSSVALQMVRLIETATVPIFGVDLGGVINGWNTKIAELTGLQASEAMGKSLVNEIIHADSGDTFKNTLSRALQGQEDKNVELKIKHFGLDQQQEVACLMVNACISRDYTDAIVGVCFVGEDITYEKVVQDKFIKLEGDYKAIIQSLSPLIPPIFSSDENVCCSEWNAAMERLTGWKRDEVIGKLLPGEIFGSFCRLKGQDTLTNFMILLYRGISRQDSEKLPFGFFHRNGEFIETYITANKKIDAGGNMLGCFCFLQIVMPDLNQPSEEHNPRGRESISESEEAYILQEMKKPLNGIRFTRKLLENTTVSENQKQFLDTSDACERQIMAIIEDTHLGSINEDTLQLNVEEFVLGNILDAIVSQVMMLIREKNLQLFHEIPDEIKMLSLYGDQIRLQVVLSDFLLNVVSHTASPNGWVEIKVSPTLKIIQDGDEFIHLQFRIAHSGQGIPSNVIHEMVEGGNQWTTQEGLGLYMSRKILRRMSGHVRYQRGQDMCYFLIDLEIRTRKERQRNLHAKTSMLS*

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